Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
COL5A1P20908 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.39□□□□□ -0.27
COL5A1P20908 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC13.39□□□□□ -0.27
COL5A1P20908 AC005722.1-201ENST00000431878 964 ntBASIC13.39□□□□□ -0.27
COL5A1P20908 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 HNRNPA3P6-201ENST00000472163 1006 ntBASIC13.39□□□□□ -0.27
COL5A1P20908 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 SRP14-208ENST00000560773 468 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 ANKRD26P1-203ENST00000569528 966 ntBASIC13.39□□□□□ -0.27
COL5A1P20908 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 NQO2-204ENST00000380454 851 ntTSL 2 BASIC13.39□□□□□ -0.27
COL5A1P20908 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC13.39□□□□□ -0.27
COL5A1P20908 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC13.39□□□□□ -0.27
COL5A1P20908 HIST1H2APS2-201ENST00000454426 370 ntBASIC13.39□□□□□ -0.27
COL5A1P20908 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 AC120498.7-201ENST00000562876 330 ntBASIC13.39□□□□□ -0.27
COL5A1P20908 AC079414.2-201ENST00000567157 1104 ntBASIC13.39□□□□□ -0.27
COL5A1P20908 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC13.39□□□□□ -0.27
COL5A1P20908 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.39□□□□□ -0.27
COL5A1P20908 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL5A1P20908 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 HSPA8P5-201ENST00000456928 2069 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 AC023141.7-201ENST00000430646 407 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 RNLS-203ENST00000437752 525 ntTSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 AC027612.2-202ENST00000445955 1199 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 AC112250.1-201ENST00000504640 745 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC13.38□□□□□ -0.27
COL5A1P20908 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 AC078814.4-201ENST00000546650 327 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC13.38□□□□□ -0.27
COL5A1P20908 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 AC010531.8-201ENST00000623341 685 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 AC139713.2-207ENST00000641556 1292 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL5A1P20908 AL022313.4-201ENST00000562756 2046 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL5A1P20908 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.38□□□□□ -0.27
COL5A1P20908 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL5A1P20908 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
COL5A1P20908 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.37□□□□□ -0.27
COL5A1P20908 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL5A1P20908 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms