Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
LRFN1Q9P244 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AL583805.1-201ENST00000391389 531 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 MPRIPP1-201ENST00000452433 1089 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AL022334.2-201ENST00000610000 484 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 AC103691.2-201ENST00000618824 433 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 AC007718.1-201ENST00000621078 280 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 SNX1-214ENST00000625244 324 ntTSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AC215219.1-201ENST00000400706 1817 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 AP002353.1-201ENST00000528257 1599 ntBASIC13.24□□□□□ -0.29
LRFN1Q9P244 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.24□□□□□ -0.29
LRFN1Q9P244 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
LRFN1Q9P244 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC006480.2-201ENST00000609770 1337 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC026316.1-201ENST00000398900 414 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 RPSAP15-201ENST00000448168 861 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AP000358.1-201ENST00000456260 156 ntBASIC13.23□□□□□ -0.29
LRFN1Q9P244 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
LRFN1Q9P244 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms