Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 LINC01815-202ENST00000641468 1409 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AP002761.4-201ENST00000565433 3361 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AC108024.1-201ENST00000626286 1721 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AC079178.1-201ENST00000420915 656 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 XBP1P1-201ENST00000436573 652 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 HLA-J-204ENST00000495278 958 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AC133540.1-201ENST00000620845 1019 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AC022748.3-201ENST00000621828 275 ntBASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RSPO3Q9BXY4 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AL355102.3-201ENST00000554299 1678 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AC025183.3-201ENST00000623526 1482 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 HMGA1P1-201ENST00000415560 1062 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 RNMTL1P1-201ENST00000454103 560 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 ACA64.2-201ENST00000459014 129 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AC079316.1-201ENST00000548397 411 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 RAB43P1-201ENST00000561790 589 ntBASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RSPO3Q9BXY4 KRT18P8-201ENST00000581937 1246 ntBASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms