Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
HLA-CQ95604 BPIFA4P-201ENST00000375465 1203 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 RPS14P4-201ENST00000415880 418 ntBASIC14.63□□□□□ -0.07
HLA-CQ95604 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 RNF181-203ENST00000441634 844 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
HLA-CQ95604 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC14.63□□□□□ -0.07
HLA-CQ95604 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.63□□□□□ -0.07
HLA-CQ95604 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC14.63□□□□□ -0.07
HLA-CQ95604 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC14.63□□□□□ -0.07
HLA-CQ95604 AC091588.3-201ENST00000583442 770 ntTSL 3 BASIC14.63□□□□□ -0.07
HLA-CQ95604 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC14.63□□□□□ -0.07
HLA-CQ95604 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
HLA-CQ95604 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC14.63□□□□□ -0.07
HLA-CQ95604 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.63□□□□□ -0.07
HLA-CQ95604 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.63□□□□□ -0.07
HLA-CQ95604 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
HLA-CQ95604 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
HLA-CQ95604 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC14.63□□□□□ -0.07
HLA-CQ95604 GOLGA8UP-201ENST00000527159 1755 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-CQ95604 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
HLA-CQ95604 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
HLA-CQ95604 AC022762.2-201ENST00000600308 1353 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
HLA-CQ95604 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 AC026884.1-201ENST00000418296 457 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC14.62□□□□□ -0.07
HLA-CQ95604 BTG3P1-201ENST00000435859 716 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 AC007919.2-201ENST00000444110 511 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC14.62□□□□□ -0.07
HLA-CQ95604 TMA16-204ENST00000508268 608 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-CQ95604 CCNL2P1-201ENST00000512846 969 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 AC092115.1-201ENST00000566277 1402 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 AL353708.1-201ENST00000567904 1257 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC14.62□□□□□ -0.07
HLA-CQ95604 PRR20FP-201ENST00000603320 180 ntBASIC14.62□□□□□ -0.07
HLA-CQ95604 SMIM26-203ENST00000608034 670 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
HLA-CQ95604 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC14.62□□□□□ -0.07
HLA-CQ95604 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
HLA-CQ95604 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.62□□□□□ -0.07
HLA-CQ95604 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
HLA-CQ95604 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
HLA-CQ95604 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
HLA-CQ95604 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 TFG-208ENST00000490574 1696 ntAPPRIS P3 TSL 3 BASIC14.61□□□□□ -0.07
HLA-CQ95604 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 CYP2T1P-202ENST00000641596 2535 ntBASIC14.61□□□□□ -0.07
HLA-CQ95604 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.61□□□□□ -0.07
HLA-CQ95604 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
HLA-CQ95604 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms