Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.2■□□□□ 0.18
CCNA1P78396 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.2■□□□□ 0.18
CCNA1P78396 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 COX20P1-201ENST00000366529 357 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 AC103592.1-201ENST00000394513 664 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 KRT18P62-201ENST00000446618 1287 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 GOLGA2P8-201ENST00000505201 779 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC16.2■□□□□ 0.18
CCNA1P78396 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.2■□□□□ 0.18
CCNA1P78396 AC013553.1-201ENST00000560906 267 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 AC010632.2-201ENST00000588369 1224 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.2■□□□□ 0.18
CCNA1P78396 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.2■□□□□ 0.18
CCNA1P78396 OR2I1P-209ENST00000641730 5365 ntBASIC16.2■□□□□ 0.18
CCNA1P78396 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.2■□□□□ 0.18
CCNA1P78396 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.2■□□□□ 0.18
CCNA1P78396 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCNA1P78396 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCNA1P78396 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 PDXDC2P-206ENST00000534700 1315 ntBASIC16.19■□□□□ 0.18
CCNA1P78396 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCNA1P78396 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCNA1P78396 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC16.19■□□□□ 0.18
CCNA1P78396 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC16.19■□□□□ 0.18
CCNA1P78396 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 SURF4-203ENST00000371991 715 ntTSL 3 BASIC16.19■□□□□ 0.18
CCNA1P78396 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
CCNA1P78396 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 VENTXP4-201ENST00000449029 958 ntBASIC16.19■□□□□ 0.18
CCNA1P78396 AC244197.1-201ENST00000456494 951 ntBASIC16.19■□□□□ 0.18
CCNA1P78396 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC16.19■□□□□ 0.18
CCNA1P78396 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
CCNA1P78396 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 FOXN3-AS2-201ENST00000554071 1262 ntBASIC16.19■□□□□ 0.18
CCNA1P78396 USB1-205ENST00000561743 1135 ntTSL 3 BASIC16.19■□□□□ 0.18
CCNA1P78396 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.19■□□□□ 0.18
CCNA1P78396 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.19■□□□□ 0.18
CCNA1P78396 AC132825.4-202ENST00000578792 434 ntBASIC16.19■□□□□ 0.18
CCNA1P78396 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC16.19■□□□□ 0.18
CCNA1P78396 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC16.19■□□□□ 0.18
CCNA1P78396 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
CCNA1P78396 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCNA1P78396 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCNA1P78396 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms