Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13□□□□□ -0.33
SUMO3P55854 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13□□□□□ -0.33
SUMO3P55854 LBH-202ENST00000401506 485 ntTSL 3 BASIC13□□□□□ -0.33
SUMO3P55854 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13□□□□□ -0.33
SUMO3P55854 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13□□□□□ -0.33
SUMO3P55854 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 ZNF767P-206ENST00000513792 565 ntBASIC13□□□□□ -0.33
SUMO3P55854 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13□□□□□ -0.33
SUMO3P55854 AC090857.1-201ENST00000527400 390 ntBASIC13□□□□□ -0.33
SUMO3P55854 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC13□□□□□ -0.33
SUMO3P55854 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 AL022334.2-201ENST00000610000 484 ntBASIC13□□□□□ -0.33
SUMO3P55854 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13□□□□□ -0.33
SUMO3P55854 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
SUMO3P55854 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SUMO3P55854 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 SNX18-202ENST00000343017 3140 ntBASIC12.99□□□□□ -0.33
SUMO3P55854 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 AMT-256ENST00000638063 1783 ntTSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 LINC01815-202ENST00000641468 1409 ntBASIC12.99□□□□□ -0.33
SUMO3P55854 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 TUBBP5-203ENST00000508529 1334 ntBASIC12.99□□□□□ -0.33
SUMO3P55854 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
SUMO3P55854 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 RNA5SP359-201ENST00000364838 113 ntBASIC12.99□□□□□ -0.33
SUMO3P55854 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
SUMO3P55854 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC12.99□□□□□ -0.33
SUMO3P55854 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 RN7SL277P-201ENST00000481521 288 ntBASIC12.99□□□□□ -0.33
SUMO3P55854 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.99□□□□□ -0.33
SUMO3P55854 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.99□□□□□ -0.33
SUMO3P55854 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 NDUFV2P1-201ENST00000596415 907 ntBASIC12.99□□□□□ -0.33
SUMO3P55854 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
SUMO3P55854 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
SUMO3P55854 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
SUMO3P55854 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
SUMO3P55854 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SUMO3P55854 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.98□□□□□ -0.33
SUMO3P55854 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC12.98□□□□□ -0.33
SUMO3P55854 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SUMO3P55854 USP39-207ENST00000450066 2086 ntTSL 2 BASIC12.98□□□□□ -0.33
SUMO3P55854 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC12.98□□□□□ -0.33
SUMO3P55854 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SUMO3P55854 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SUMO3P55854 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.98□□□□□ -0.33
SUMO3P55854 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
SUMO3P55854 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SUMO3P55854 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.98□□□□□ -0.33
SUMO3P55854 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.98□□□□□ -0.33
SUMO3P55854 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
SUMO3P55854 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms