Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.95□□□□□ -0.18
FOXA1P55317 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
FOXA1P55317 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
FOXA1P55317 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 MARK2P9-201ENST00000430958 1727 ntBASIC13.94□□□□□ -0.18
FOXA1P55317 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.94□□□□□ -0.18
FOXA1P55317 AHRR-211ENST00000515206 462 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.94□□□□□ -0.18
FOXA1P55317 AP006547.1-201ENST00000563435 692 ntBASIC13.94□□□□□ -0.18
FOXA1P55317 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 AC244394.1-201ENST00000435000 1665 ntBASIC13.94□□□□□ -0.18
FOXA1P55317 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
FOXA1P55317 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
FOXA1P55317 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 AHCYP2-201ENST00000430630 1300 ntBASIC13.93□□□□□ -0.18
FOXA1P55317 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA1P55317 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA1P55317 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA1P55317 AC112492.5-201ENST00000421897 457 ntBASIC13.93□□□□□ -0.18
FOXA1P55317 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA1P55317 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA1P55317 KLF2P1-201ENST00000447438 1042 ntBASIC13.93□□□□□ -0.18
FOXA1P55317 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA1P55317 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA1P55317 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA1P55317 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.93□□□□□ -0.18
FOXA1P55317 DUX4L46-201ENST00000566845 751 ntBASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms