Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LIG3P49916 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 AC131902.2-201ENST00000566892 2172 ntBASIC15.28■□□□□ 0.04
LIG3P49916 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
LIG3P49916 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 IFT81-201ENST00000242591 3108 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.27■□□□□ 0.04
LIG3P49916 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LIG3P49916 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LIG3P49916 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.27■□□□□ 0.04
LIG3P49916 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.27■□□□□ 0.04
LIG3P49916 GHSR-202ENST00000427970 912 ntBASIC15.27■□□□□ 0.04
LIG3P49916 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.27■□□□□ 0.04
LIG3P49916 RPL7P3-201ENST00000441388 714 ntBASIC15.27■□□□□ 0.04
LIG3P49916 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.27■□□□□ 0.04
LIG3P49916 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.27■□□□□ 0.04
LIG3P49916 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC15.27■□□□□ 0.04
LIG3P49916 AP000812.2-201ENST00000538934 718 ntBASIC15.27■□□□□ 0.04
LIG3P49916 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 MIR6752-201ENST00000618442 71 ntBASIC15.27■□□□□ 0.04
LIG3P49916 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
LIG3P49916 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
LIG3P49916 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.03
LIG3P49916 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
LIG3P49916 LRRC59-203ENST00000576448 1531 ntBASIC15.27■□□□□ 0.03
LIG3P49916 ZFAND3-201ENST00000287218 3366 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.27■□□□□ 0.03
LIG3P49916 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LIG3P49916 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LIG3P49916 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.27■□□□□ 0.03
LIG3P49916 AC023794.5-201ENST00000564380 2157 ntBASIC15.26■□□□□ 0.03
LIG3P49916 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 AC055811.4-201ENST00000624039 1754 ntBASIC15.26■□□□□ 0.03
LIG3P49916 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 AL138709.1-201ENST00000614840 1693 ntBASIC15.26■□□□□ 0.03
LIG3P49916 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
LIG3P49916 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.26■□□□□ 0.03
LIG3P49916 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.26■□□□□ 0.03
LIG3P49916 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.26■□□□□ 0.03
LIG3P49916 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.26■□□□□ 0.03
LIG3P49916 KRT90P-201ENST00000549264 1064 ntBASIC15.26■□□□□ 0.03
LIG3P49916 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LIG3P49916 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.26■□□□□ 0.03
LIG3P49916 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms