Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.25□□□□□ -0.29
MSX1P28360 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 AC004899.1-201ENST00000424687 1714 ntBASIC13.25□□□□□ -0.29
MSX1P28360 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 AC097359.2-201ENST00000604992 2389 ntBASIC13.24□□□□□ -0.29
MSX1P28360 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
MSX1P28360 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 DPM3-202ENST00000368399 517 ntBASIC13.24□□□□□ -0.29
MSX1P28360 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 MSRA-203ENST00000441698 788 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC13.24□□□□□ -0.29
MSX1P28360 HLA-J-204ENST00000495278 958 ntBASIC13.24□□□□□ -0.29
MSX1P28360 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.24□□□□□ -0.29
MSX1P28360 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 SYT17-208ENST00000568433 812 ntTSL 3 BASIC13.24□□□□□ -0.29
MSX1P28360 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC13.24□□□□□ -0.29
MSX1P28360 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.24□□□□□ -0.29
MSX1P28360 AL133445.2-201ENST00000611191 527 ntBASIC13.24□□□□□ -0.29
MSX1P28360 AL591471.1-201ENST00000621855 229 ntBASIC13.24□□□□□ -0.29
MSX1P28360 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.24□□□□□ -0.29
MSX1P28360 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.24□□□□□ -0.29
MSX1P28360 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
MSX1P28360 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
MSX1P28360 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 AC011498.7-201ENST00000624986 2027 ntBASIC13.23□□□□□ -0.29
MSX1P28360 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 KC6-207ENST00000600644 2311 ntTSL 3 BASIC13.23□□□□□ -0.29
MSX1P28360 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 AC005089.1-201ENST00000619486 2241 ntBASIC13.23□□□□□ -0.29
MSX1P28360 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.23□□□□□ -0.29
MSX1P28360 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.23□□□□□ -0.29
MSX1P28360 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 AC091046.1-201ENST00000331871 207 ntBASIC13.23□□□□□ -0.29
MSX1P28360 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms