Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.89■□□□□ 0.13
COL11A1P12107 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC15.89■□□□□ 0.13
COL11A1P12107 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL11A1P12107 AP000354.1-201ENST00000396982 456 ntBASIC15.89■□□□□ 0.13
COL11A1P12107 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC15.89■□□□□ 0.13
COL11A1P12107 AL451000.1-201ENST00000451300 1186 ntBASIC15.89■□□□□ 0.13
COL11A1P12107 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC15.89■□□□□ 0.13
COL11A1P12107 AC068831.5-201ENST00000557387 328 ntBASIC15.89■□□□□ 0.13
COL11A1P12107 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC15.89■□□□□ 0.13
COL11A1P12107 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC15.89■□□□□ 0.13
COL11A1P12107 GARS-210ENST00000627489 324 ntTSL 4 BASIC15.89■□□□□ 0.13
COL11A1P12107 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 AC016397.2-201ENST00000624848 1985 ntBASIC15.88■□□□□ 0.13
COL11A1P12107 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.88■□□□□ 0.13
COL11A1P12107 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
COL11A1P12107 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL11A1P12107 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.88■□□□□ 0.13
COL11A1P12107 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL11A1P12107 GOLGA8EP-201ENST00000530246 1959 ntBASIC15.88■□□□□ 0.13
COL11A1P12107 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL11A1P12107 AL080243.1-201ENST00000423293 1060 ntBASIC15.88■□□□□ 0.13
COL11A1P12107 AC136604.1-202ENST00000425471 771 ntBASIC15.88■□□□□ 0.13
COL11A1P12107 ZNF877P-201ENST00000437614 612 ntBASIC15.88■□□□□ 0.13
COL11A1P12107 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL11A1P12107 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.88■□□□□ 0.13
COL11A1P12107 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC15.88■□□□□ 0.13
COL11A1P12107 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL11A1P12107 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL11A1P12107 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL11A1P12107 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.88■□□□□ 0.13
COL11A1P12107 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC15.88■□□□□ 0.13
COL11A1P12107 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 ZNF436-AS1-201ENST00000335648 2547 ntBASIC15.87■□□□□ 0.13
COL11A1P12107 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL11A1P12107 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC15.87■□□□□ 0.13
COL11A1P12107 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 URAHP-205ENST00000610227 398 ntBASIC15.87■□□□□ 0.13
COL11A1P12107 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC15.87■□□□□ 0.13
COL11A1P12107 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.87■□□□□ 0.13
COL11A1P12107 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
COL11A1P12107 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.87■□□□□ 0.13
COL11A1P12107 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL11A1P12107 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
COL11A1P12107 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
COL11A1P12107 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
COL11A1P12107 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.87■□□□□ 0.13
COL11A1P12107 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL11A1P12107 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 RN7SL596P-201ENST00000582123 288 ntBASIC15.87■□□□□ 0.13
COL11A1P12107 EIF5AP2-201ENST00000585668 1047 ntBASIC15.87■□□□□ 0.13
COL11A1P12107 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC15.87■□□□□ 0.13
COL11A1P12107 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL11A1P12107 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL11A1P12107 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL11A1P12107 AC152010.1-201ENST00000415779 2006 ntBASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms