Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM1P09493 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM1P09493 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
TPM1P09493 ACKR1-201ENST00000368121 1240 ntBASIC15.96■□□□□ 0.15
TPM1P09493 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.96■□□□□ 0.15
TPM1P09493 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.96■□□□□ 0.15
TPM1P09493 AC004466.1-201ENST00000599515 1080 ntBASIC15.96■□□□□ 0.15
TPM1P09493 BX088702.1-201ENST00000610784 235 ntBASIC15.96■□□□□ 0.15
TPM1P09493 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
TPM1P09493 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
TPM1P09493 TRABD2B-202ENST00000606738 7034 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
TPM1P09493 AC068075.1-201ENST00000519714 1832 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TPM1P09493 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
TPM1P09493 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
TPM1P09493 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM1P09493 ABI2-202ENST00000261017 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM1P09493 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM1P09493 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
TPM1P09493 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
TPM1P09493 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 USP47-202ENST00000339865 7775 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 TRAK1-210ENST00000613405 4672 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 RNF43-201ENST00000407977 5516 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC15.95■□□□□ 0.14
TPM1P09493 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC15.95■□□□□ 0.14
TPM1P09493 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 USP17L6P-201ENST00000382470 1197 ntBASIC15.95■□□□□ 0.14
TPM1P09493 MIR1233-2-201ENST00000408138 82 ntBASIC15.95■□□□□ 0.14
TPM1P09493 MIR1233-1-201ENST00000408722 82 ntBASIC15.95■□□□□ 0.14
TPM1P09493 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 GNAQP1-201ENST00000444815 1067 ntBASIC15.95■□□□□ 0.14
TPM1P09493 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 ENPP7P5-201ENST00000541031 1031 ntBASIC15.95■□□□□ 0.14
TPM1P09493 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.95■□□□□ 0.14
TPM1P09493 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.95■□□□□ 0.14
TPM1P09493 AC004790.1-201ENST00000612686 536 ntBASIC15.95■□□□□ 0.14
TPM1P09493 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 AL691403.2-201ENST00000618460 490 ntBASIC15.95■□□□□ 0.14
TPM1P09493 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TPM1P09493 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TPM1P09493 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
TPM1P09493 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TPM1P09493 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TPM1P09493 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC15.94■□□□□ 0.14
TPM1P09493 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TPM1P09493 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TPM1P09493 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TPM1P09493 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
TPM1P09493 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.94■□□□□ 0.14
TPM1P09493 AC245100.3-201ENST00000441281 285 ntBASIC15.94■□□□□ 0.14
TPM1P09493 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TPM1P09493 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.94■□□□□ 0.14
TPM1P09493 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms