Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
CHMP1AQ9HD42 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 MIR497HG-202ENST00000572453 3838 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 AC023794.5-201ENST00000564380 2157 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 TCAM1P-207ENST00000485295 1537 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 AC026434.2-201ENST00000506094 1078 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 AC106028.4-201ENST00000614509 607 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 PRSS30P-206ENST00000641773 873 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 ST6GAL2-201ENST00000361686 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 SCN8A-209ENST00000627620 5943 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 RRBP1-201ENST00000246043 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 AC010336.1-201ENST00000539278 4739 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 FAM225A-202ENST00000453010 5625 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 AC012617.1-204ENST00000586340 2305 ntBASIC12.53□□□□□ -0.4
CHMP1AQ9HD42 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 FAM90A12P-201ENST00000519497 2375 ntBASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 FAM90A24P-201ENST00000520792 2369 ntBASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 ALK-205ENST00000618119 4646 ntTSL 5 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CHMP1AQ9HD42 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms