Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCDC3Q9BQI4 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 KRT8P28-201ENST00000433288 1390 ntBASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AL590440.2-201ENST00000641973 1595 ntBASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AC009093.10-201ENST00000641956 1442 ntBASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 RNA5SP359-201ENST00000364838 113 ntBASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 RPSAP31-201ENST00000416648 895 ntBASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 RN7SL8P-201ENST00000461771 266 ntBASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC3Q9BQI4 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC3Q9BQI4 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC3Q9BQI4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC14.08□□□□□ -0.15
CCDC3Q9BQI4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.15
CCDC3Q9BQI4 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC3Q9BQI4 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 AL512430.1-201ENST00000392575 860 ntBASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 BANF1P3-201ENST00000412556 261 ntBASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 AP002803.1-201ENST00000528836 498 ntBASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 FOS-204ENST00000554617 796 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 AL031713.1-201ENST00000564813 661 ntBASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 AC138894.2-201ENST00000602838 371 ntBASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 AC242376.2-201ENST00000619355 883 ntBASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC3Q9BQI4 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms