Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNF20Q5VTR2 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.24■□□□□ 0.35
RNF20Q5VTR2 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 AL031595.1-201ENST00000623969 4709 ntBASIC17.23■□□□□ 0.35
RNF20Q5VTR2 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.23■□□□□ 0.35
RNF20Q5VTR2 AC006122.1-201ENST00000493323 440 ntBASIC17.23■□□□□ 0.35
RNF20Q5VTR2 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 AL160314.3-201ENST00000556041 767 ntBASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 AL591471.1-201ENST00000621855 229 ntBASIC17.23■□□□□ 0.35
RNF20Q5VTR2 AC090386.2-201ENST00000623010 1039 ntBASIC17.23■□□□□ 0.35
RNF20Q5VTR2 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC17.23■□□□□ 0.35
RNF20Q5VTR2 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC131212.3-201ENST00000624087 4219 ntBASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 RET-205ENST00000615310 4337 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC087386.2-201ENST00000623212 4637 ntBASIC17.22■□□□□ 0.35
RNF20Q5VTR2 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNF20Q5VTR2 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF20Q5VTR2 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC17.21■□□□□ 0.35
RNF20Q5VTR2 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF20Q5VTR2 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF20Q5VTR2 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RNF20Q5VTR2 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
RNF20Q5VTR2 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms