Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 IGHV3-66-201ENST00000390632 427 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
COL9A1P20849 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC14.71□□□□□ -0.05
COL9A1P20849 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
COL9A1P20849 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC14.71□□□□□ -0.05
COL9A1P20849 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC14.71□□□□□ -0.05
COL9A1P20849 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 F11R-204ENST00000537746 1245 ntTSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC14.71□□□□□ -0.05
COL9A1P20849 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.71□□□□□ -0.05
COL9A1P20849 ABCC6P1-203ENST00000565566 1170 ntBASIC14.71□□□□□ -0.05
COL9A1P20849 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC14.71□□□□□ -0.05
COL9A1P20849 ANKRD26P1-203ENST00000569528 966 ntBASIC14.71□□□□□ -0.05
COL9A1P20849 RN7SL478P-201ENST00000584358 298 ntBASIC14.71□□□□□ -0.05
COL9A1P20849 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC14.71□□□□□ -0.05
COL9A1P20849 AC115618.3-201ENST00000623114 425 ntBASIC14.71□□□□□ -0.05
COL9A1P20849 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC14.71□□□□□ -0.05
COL9A1P20849 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.71□□□□□ -0.05
COL9A1P20849 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.71□□□□□ -0.05
COL9A1P20849 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
COL9A1P20849 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL9A1P20849 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.71□□□□□ -0.06
COL9A1P20849 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
COL9A1P20849 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.06
COL9A1P20849 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL9A1P20849 AC006504.5-208ENST00000588784 2401 ntBASIC14.71□□□□□ -0.06
COL9A1P20849 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.71□□□□□ -0.06
COL9A1P20849 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL9A1P20849 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 API5-208ENST00000531273 1868 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 CICP6-201ENST00000457191 2729 ntBASIC14.7□□□□□ -0.06
COL9A1P20849 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 AC003075.1-208ENST00000415246 596 ntTSL 3 BASIC14.7□□□□□ -0.06
COL9A1P20849 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 AC004910.1-201ENST00000433493 787 ntBASIC14.7□□□□□ -0.06
COL9A1P20849 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.7□□□□□ -0.06
COL9A1P20849 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC14.7□□□□□ -0.06
COL9A1P20849 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC14.7□□□□□ -0.06
COL9A1P20849 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC14.7□□□□□ -0.06
COL9A1P20849 AC148476.1-201ENST00000622182 705 ntBASIC14.7□□□□□ -0.06
COL9A1P20849 AC097520.1-201ENST00000624435 385 ntBASIC14.7□□□□□ -0.06
COL9A1P20849 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC14.7□□□□□ -0.06
COL9A1P20849 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.7□□□□□ -0.06
COL9A1P20849 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.7□□□□□ -0.06
COL9A1P20849 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.7□□□□□ -0.06
COL9A1P20849 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL9A1P20849 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 AL109954.1-202ENST00000564051 2148 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.69□□□□□ -0.06
COL9A1P20849 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 AC009093.10-201ENST00000641956 1442 ntBASIC14.69□□□□□ -0.06
COL9A1P20849 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.69□□□□□ -0.06
COL9A1P20849 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL9A1P20849 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC14.69□□□□□ -0.06
COL9A1P20849 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms