Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC14.41□□□□□ -0.1
SHOX2O60902 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 MIR574-201ENST00000385209 96 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.41□□□□□ -0.1
SHOX2O60902 SNORA50C-201ENST00000408535 133 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 AL080243.2-201ENST00000418783 582 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 MTND6P24-201ENST00000440466 518 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 LINC01428-201ENST00000449581 874 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.41□□□□□ -0.1
SHOX2O60902 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.41□□□□□ -0.1
SHOX2O60902 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.41□□□□□ -0.1
SHOX2O60902 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 SNORA50.1-201ENST00000628590 135 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 AL603764.1-201ENST00000636452 321 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 GLIPR2-202ENST00000377960 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 POLL-202ENST00000339310 2289 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 LMBR1L-201ENST00000267102 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 CA10-202ENST00000442502 2935 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 CHIAP2-201ENST00000369743 2829 ntTSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 BHMT-201ENST00000274353 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC14.41□□□□□ -0.1
SHOX2O60902 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
SHOX2O60902 ELL2P1-201ENST00000413990 1906 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 DRD5P1-201ENST00000456605 1438 ntBASIC14.41□□□□□ -0.1
SHOX2O60902 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SHOX2O60902 CACNG3-201ENST00000005284 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC14.4□□□□□ -0.1
SHOX2O60902 SP140L-203ENST00000415673 2665 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SHOX2O60902 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 NUF2-201ENST00000271452 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 EPS15L1-201ENST00000248070 2924 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
SHOX2O60902 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.4□□□□□ -0.1
SHOX2O60902 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.4□□□□□ -0.1
SHOX2O60902 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 NUS1P3-201ENST00000423502 862 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 INE1-201ENST00000456273 945 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 SERBP1P3-201ENST00000459980 809 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 KRT18P58-201ENST00000527480 1120 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.4□□□□□ -0.1
SHOX2O60902 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 AC093520.2-201ENST00000561830 333 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 AC005586.2-201ENST00000563946 837 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.4□□□□□ -0.1
SHOX2O60902 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 AC092028.1-202ENST00000641483 3547 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 AC092028.1-201ENST00000641781 3540 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.4□□□□□ -0.1
SHOX2O60902 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 TEX35-203ENST00000367641 2377 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SHOX2O60902 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.4□□□□□ -0.1
SHOX2O60902 FILIP1L-203ENST00000383694 3280 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 AC020917.4-201ENST00000623994 1999 ntBASIC14.4□□□□□ -0.1
SHOX2O60902 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
SHOX2O60902 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SHOX2O60902 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SHOX2O60902 UBA3-201ENST00000349511 2112 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
SHOX2O60902 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SHOX2O60902 MDH2-204ENST00000443006 2020 ntTSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms