Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
SLC28A1O00337 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SLC28A1O00337 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SLC28A1O00337 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
SLC28A1O00337 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.92□□□□□ -0.18
SLC28A1O00337 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SLC28A1O00337 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SLC28A1O00337 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 AL512384.1-201ENST00000406683 331 ntBASIC13.91□□□□□ -0.18
SLC28A1O00337 MIR1202-201ENST00000408529 83 ntBASIC13.91□□□□□ -0.18
SLC28A1O00337 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
SLC28A1O00337 INE1-201ENST00000456273 945 ntBASIC13.91□□□□□ -0.18
SLC28A1O00337 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC13.91□□□□□ -0.18
SLC28A1O00337 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.91□□□□□ -0.18
SLC28A1O00337 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.91□□□□□ -0.18
SLC28A1O00337 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.91□□□□□ -0.18
SLC28A1O00337 AC021016.3-201ENST00000608367 477 ntBASIC13.91□□□□□ -0.18
SLC28A1O00337 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 AL591163.1-201ENST00000641757 987 ntBASIC13.91□□□□□ -0.18
SLC28A1O00337 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
SLC28A1O00337 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SLC28A1O00337 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.91□□□□□ -0.18
SLC28A1O00337 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 AHCYP2-201ENST00000430630 1300 ntBASIC13.9□□□□□ -0.18
SLC28A1O00337 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SLC28A1O00337 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 TMBIM7P-202ENST00000641474 1516 ntBASIC13.9□□□□□ -0.18
SLC28A1O00337 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SLC28A1O00337 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
SLC28A1O00337 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.9□□□□□ -0.18
SLC28A1O00337 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.9□□□□□ -0.18
SLC28A1O00337 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.9□□□□□ -0.18
SLC28A1O00337 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 AK2P2-201ENST00000439142 405 ntBASIC13.9□□□□□ -0.18
SLC28A1O00337 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.9□□□□□ -0.18
SLC28A1O00337 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.9□□□□□ -0.18
SLC28A1O00337 RN7SL692P-201ENST00000464677 288 ntBASIC13.9□□□□□ -0.18
SLC28A1O00337 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.9□□□□□ -0.18
SLC28A1O00337 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 C2orf69P2-201ENST00000562032 1123 ntBASIC13.9□□□□□ -0.18
SLC28A1O00337 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.9□□□□□ -0.18
SLC28A1O00337 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
SLC28A1O00337 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms