Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 TUBB4AP1-201ENST00000450755 1325 ntBASIC12.58□□□□□ -0.4
SHISA3A0PJX4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SHISA3A0PJX4 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 B4GALT4-201ENST00000359213 2385 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AC241585.1-201ENST00000433527 519 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 INE1-201ENST00000456273 945 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AC138466.3-201ENST00000619983 221 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AC008761.3-201ENST00000624803 892 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 LINC01165-201ENST00000445190 1623 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AC027369.3-201ENST00000530465 3707 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 LINC00638-201ENST00000555578 2518 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 SALL4P6-201ENST00000429385 1691 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 FKBP4P6-201ENST00000457486 1332 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 ADAMTS7P1-201ENST00000613213 4793 ntBASIC12.57□□□□□ -0.4
SHISA3A0PJX4 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC12.57□□□□□ -0.4
SHISA3A0PJX4 RRBP1-206ENST00000455029 2485 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 ZCCHC12-201ENST00000310164 2231 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 CALY-202ENST00000368555 783 ntTSL 2 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.56□□□□□ -0.4
SHISA3A0PJX4 TSEN15P1-201ENST00000423257 515 ntBASIC12.56□□□□□ -0.4
SHISA3A0PJX4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms