Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
COL4A3BPQ9Y5P4 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A3BPQ9Y5P4 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
COL4A3BPQ9Y5P4 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A3BPQ9Y5P4 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A3BPQ9Y5P4 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
COL4A3BPQ9Y5P4 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.18
COL4A3BPQ9Y5P4 AL157791.1-201ENST00000553667 1699 ntBASIC16.14■□□□□ 0.18
COL4A3BPQ9Y5P4 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC104506.1-201ENST00000609247 429 ntBASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC011474.4-201ENST00000623523 2076 ntBASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 MST1P2-201ENST00000457982 2291 ntBASIC16.14■□□□□ 0.17
COL4A3BPQ9Y5P4 AC008132.1-202ENST00000342005 1389 ntBASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 Z97180.1-201ENST00000445173 988 ntBASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
COL4A3BPQ9Y5P4 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 HSPA8P5-201ENST00000456928 2069 ntBASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL4A3BPQ9Y5P4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms