Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CICP17-201ENST00000418553 2377 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AC015909.5-201ENST00000624336 2266 ntBASIC11.72□□□□□ -0.53
FOXA2Q9Y261 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 RET-205ENST00000615310 4337 ntTSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
FOXA2Q9Y261 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 TCAF1P1-201ENST00000414990 2232 ntBASIC11.71□□□□□ -0.53
FOXA2Q9Y261 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 YBX1P6-201ENST00000442962 1002 ntBASIC11.71□□□□□ -0.53
FOXA2Q9Y261 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 SNX29P1-201ENST00000548357 1007 ntBASIC11.71□□□□□ -0.53
FOXA2Q9Y261 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 RN7SL713P-201ENST00000582127 302 ntBASIC11.71□□□□□ -0.53
FOXA2Q9Y261 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 IFT20-216ENST00000588477 774 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 MIR6775-201ENST00000617557 69 ntBASIC11.71□□□□□ -0.53
FOXA2Q9Y261 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
FOXA2Q9Y261 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
FOXA2Q9Y261 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC11.7□□□□□ -0.54
FOXA2Q9Y261 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms