Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
VPS13AQ96RL7 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 AC013268.4-201ENST00000637413 2228 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 LILRP2-202ENST00000413572 1383 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 RN7SL351P-201ENST00000469306 248 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 AC239600.1-201ENST00000603201 462 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 AC020658.6-201ENST00000623564 1870 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 RN7SL838P-201ENST00000481676 295 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 TMEM154-202ENST00000504064 878 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 RN7SKP155-201ENST00000516031 288 ntBASIC13.8□□□□□ -0.2
VPS13AQ96RL7 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC13.8□□□□□ -0.2
VPS13AQ96RL7 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 OR4C14P-201ENST00000440929 923 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC023051.2-201ENST00000541141 460 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 RN7SL455P-201ENST00000580629 282 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC073347.1-201ENST00000421633 2643 ntBASIC13.79□□□□□ -0.2
VPS13AQ96RL7 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CTLA4-201ENST00000295854 525 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 RBM14-205ENST00000443702 732 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
VPS13AQ96RL7 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 273.5 ms