Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
LRCH3Q96II8 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LRCH3Q96II8 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.54■□□□□ 0.08
LRCH3Q96II8 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
LRCH3Q96II8 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC15.54■□□□□ 0.08
LRCH3Q96II8 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.54■□□□□ 0.08
LRCH3Q96II8 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LRCH3Q96II8 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AC138035.3-201ENST00000622706 2791 ntBASIC15.53■□□□□ 0.08
LRCH3Q96II8 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AC022762.2-201ENST00000600308 1353 ntBASIC15.53■□□□□ 0.08
LRCH3Q96II8 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CFL1P6-201ENST00000400899 494 ntBASIC15.53■□□□□ 0.08
LRCH3Q96II8 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 KRT18P4-201ENST00000422599 1288 ntBASIC15.53■□□□□ 0.08
LRCH3Q96II8 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AC011431.1-201ENST00000512971 230 ntBASIC15.53■□□□□ 0.08
LRCH3Q96II8 LY6E-215ENST00000523847 427 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC15.53■□□□□ 0.08
LRCH3Q96II8 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRCH3Q96II8 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC15.53■□□□□ 0.08
LRCH3Q96II8 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 HSFY1P1-201ENST00000423928 1178 ntBASIC15.52■□□□□ 0.08
LRCH3Q96II8 SNRPCP15-201ENST00000424055 192 ntBASIC15.52■□□□□ 0.08
LRCH3Q96II8 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 CDK4P1-201ENST00000454213 828 ntBASIC15.52■□□□□ 0.08
LRCH3Q96II8 B9D1-206ENST00000461069 923 ntTSL 2 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 ISL1-203ENST00000511384 981 ntTSL 5 BASIC15.52■□□□□ 0.08
LRCH3Q96II8 IGHV1-12-201ENST00000518307 205 ntBASIC15.52■□□□□ 0.08
LRCH3Q96II8 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 VENTXP3-201ENST00000546480 773 ntBASIC15.52■□□□□ 0.08
LRCH3Q96II8 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRCH3Q96II8 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC15.52■□□□□ 0.08
LRCH3Q96II8 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms