Protein–RNA interactions for Protein: Q92499

DDX1, ATP-dependent RNA helicase DDX1, humanhuman

Known RBP Predictions only

Length 740 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX1Q92499 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
DDX1Q92499 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
DDX1Q92499 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
DDX1Q92499 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.32■□□□□ 0.04
DDX1Q92499 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.32■□□□□ 0.04
DDX1Q92499 TUBB8P8-201ENST00000458717 1058 ntBASIC15.32■□□□□ 0.04
DDX1Q92499 HLA-J-204ENST00000495278 958 ntBASIC15.32■□□□□ 0.04
DDX1Q92499 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.32■□□□□ 0.04
DDX1Q92499 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.32■□□□□ 0.04
DDX1Q92499 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.32■□□□□ 0.04
DDX1Q92499 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.32■□□□□ 0.04
DDX1Q92499 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.32■□□□□ 0.04
DDX1Q92499 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.32■□□□□ 0.04
DDX1Q92499 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC15.32■□□□□ 0.04
DDX1Q92499 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.32■□□□□ 0.04
DDX1Q92499 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 AC072061.1-201ENST00000569710 2234 ntBASIC15.32■□□□□ 0.04
DDX1Q92499 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
DDX1Q92499 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.32■□□□□ 0.04
DDX1Q92499 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
DDX1Q92499 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
DDX1Q92499 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
DDX1Q92499 AL928654.5-201ENST00000624831 2501 ntBASIC15.32■□□□□ 0.04
DDX1Q92499 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.31■□□□□ 0.04
DDX1Q92499 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
DDX1Q92499 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
DDX1Q92499 AL355334.1-201ENST00000417713 215 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 XBP1P1-201ENST00000436573 652 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.31■□□□□ 0.04
DDX1Q92499 AC114501.1-201ENST00000445949 172 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 RNMTL1P1-201ENST00000454103 560 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC15.31■□□□□ 0.04
DDX1Q92499 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC15.31■□□□□ 0.04
DDX1Q92499 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC15.31■□□□□ 0.04
DDX1Q92499 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.31■□□□□ 0.04
DDX1Q92499 BNIP3P13-201ENST00000599968 566 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 HLA-C-210ENST00000640219 976 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 KRT8P29-201ENST00000420409 1371 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 LINC02486-201ENST00000604157 3000 ntBASIC15.31■□□□□ 0.04
DDX1Q92499 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
DDX1Q92499 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC15.31■□□□□ 0.04
DDX1Q92499 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
DDX1Q92499 USP39-220ENST00000613444 2161 ntTSL 2 BASIC15.31■□□□□ 0.04
DDX1Q92499 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms