Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
DEPDC4Q8N2C3 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 KRT8P14-201ENST00000414254 1442 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AL442647.2-201ENST00000429864 857 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AL162726.2-201ENST00000438986 1017 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AC007389.4-201ENST00000454674 793 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AL158212.4-201ENST00000624062 1286 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 FAM90A12P-201ENST00000519497 2375 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 FAM90A24P-201ENST00000520792 2369 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AC090643.2-201ENST00000623442 2029 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 KRT8P35-201ENST00000483942 1338 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 AC093525.8-201ENST00000624099 1342 ntBASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
DEPDC4Q8N2C3 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 LINC01749-202ENST00000607802 3408 ntTSL 2 BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
DEPDC4Q8N2C3 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC083964.2-201ENST00000623988 2396 ntBASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 TP73-201ENST00000346387 4854 ntTSL 5 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 DNM1P41-201ENST00000623634 3350 ntBASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC073987.1-201ENST00000422683 638 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC134915.1-201ENST00000426461 574 ntBASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 TTTY23B-201ENST00000442790 549 ntBASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.58□□□□□ -0.24
DEPDC4Q8N2C3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms