Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
MRE11P49959 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
MRE11P49959 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.95■□□□□ 0.3
MRE11P49959 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.95■□□□□ 0.3
MRE11P49959 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 FXNP2-201ENST00000411625 547 ntBASIC16.95■□□□□ 0.3
MRE11P49959 AC009477.1-201ENST00000452936 217 ntBASIC16.95■□□□□ 0.3
MRE11P49959 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.95■□□□□ 0.3
MRE11P49959 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 AL583810.1-201ENST00000553344 1045 ntBASIC16.95■□□□□ 0.3
MRE11P49959 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.95■□□□□ 0.3
MRE11P49959 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 SAMD11P1-201ENST00000571429 661 ntBASIC16.95■□□□□ 0.3
MRE11P49959 AC008735.3-201ENST00000596646 500 ntBASIC16.95■□□□□ 0.3
MRE11P49959 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MRE11P49959 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.95■□□□□ 0.3
MRE11P49959 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MRE11P49959 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MRE11P49959 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MRE11P49959 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 AC107375.1-201ENST00000564464 2231 ntBASIC16.94■□□□□ 0.3
MRE11P49959 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.94■□□□□ 0.3
MRE11P49959 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 TARDBPP1-201ENST00000442013 1203 ntBASIC16.94■□□□□ 0.3
MRE11P49959 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.94■□□□□ 0.3
MRE11P49959 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC16.94■□□□□ 0.3
MRE11P49959 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 MIR3615-201ENST00000581999 87 ntBASIC16.94■□□□□ 0.3
MRE11P49959 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.94■□□□□ 0.3
MRE11P49959 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.94■□□□□ 0.3
MRE11P49959 AC026740.1-201ENST00000607068 791 ntBASIC16.94■□□□□ 0.3
MRE11P49959 U62317.3-201ENST00000608319 855 ntBASIC16.94■□□□□ 0.3
MRE11P49959 RNA5-8SN1-201ENST00000610460 153 ntBASIC16.94■□□□□ 0.3
MRE11P49959 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.94■□□□□ 0.3
MRE11P49959 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.94■□□□□ 0.3
MRE11P49959 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.94■□□□□ 0.3
MRE11P49959 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
MRE11P49959 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
MRE11P49959 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MRE11P49959 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MRE11P49959 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.93■□□□□ 0.3
MRE11P49959 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 AL157414.3-201ENST00000624276 1954 ntBASIC16.93■□□□□ 0.3
MRE11P49959 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MRE11P49959 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MRE11P49959 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MRE11P49959 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.93■□□□□ 0.3
MRE11P49959 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 Z98257.2-202ENST00000641138 1548 ntBASIC16.93■□□□□ 0.3
MRE11P49959 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.93■□□□□ 0.3
MRE11P49959 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms