Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.32■□□□□ 0.04
LIG3P49916 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 PRSS30P-206ENST00000641773 873 ntBASIC15.32■□□□□ 0.04
LIG3P49916 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 KRT8P35-201ENST00000483942 1338 ntBASIC15.32■□□□□ 0.04
LIG3P49916 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 AC018442.1-201ENST00000421439 2061 ntBASIC15.32■□□□□ 0.04
LIG3P49916 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
LIG3P49916 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
LIG3P49916 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
LIG3P49916 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LIG3P49916 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LIG3P49916 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 ANKRD19P-201ENST00000338192 862 ntBASIC15.31■□□□□ 0.04
LIG3P49916 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.31■□□□□ 0.04
LIG3P49916 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.31■□□□□ 0.04
LIG3P49916 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 AC016694.1-201ENST00000434179 700 ntBASIC15.31■□□□□ 0.04
LIG3P49916 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 KLF2P4-201ENST00000451959 1225 ntBASIC15.31■□□□□ 0.04
LIG3P49916 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 CTBP2P5-201ENST00000454986 1264 ntBASIC15.31■□□□□ 0.04
LIG3P49916 TMEM198B-204ENST00000484016 896 ntBASIC15.31■□□□□ 0.04
LIG3P49916 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
LIG3P49916 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 AC145423.3-201ENST00000615987 467 ntBASIC15.31■□□□□ 0.04
LIG3P49916 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.31■□□□□ 0.04
LIG3P49916 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LIG3P49916 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LIG3P49916 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.31■□□□□ 0.04
LIG3P49916 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.31■□□□□ 0.04
LIG3P49916 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
LIG3P49916 AC016397.2-201ENST00000624848 1985 ntBASIC15.31■□□□□ 0.04
LIG3P49916 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LIG3P49916 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LIG3P49916 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.31■□□□□ 0.04
LIG3P49916 SLC25A26-202ENST00000354883 2673 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 AL365181.3-201ENST00000605886 3222 ntBASIC15.3■□□□□ 0.04
LIG3P49916 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.3■□□□□ 0.04
LIG3P49916 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.3■□□□□ 0.04
LIG3P49916 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 AC119751.2-201ENST00000504529 210 ntBASIC15.3■□□□□ 0.04
LIG3P49916 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 KRT8P24-201ENST00000560290 1559 ntBASIC15.3■□□□□ 0.04
LIG3P49916 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 GNRHR2-203ENST00000581100 1187 ntBASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms