Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 AL354702.1-201ENST00000442006 1960 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXA1P49639 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXA1P49639 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 AC107890.1-201ENST00000422478 521 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXA1P49639 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 KLF2P3-201ENST00000451977 1087 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXA1P49639 SLBP-205ENST00000488267 987 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 AC092865.5-201ENST00000545435 363 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.09□□□□□ -0.47
HOXA1P49639 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 AC027612.4-201ENST00000605371 583 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 AL158212.4-201ENST00000624062 1286 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC12.09□□□□□ -0.47
HOXA1P49639 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 AC087499.5-201ENST00000452760 1342 ntBASIC12.09□□□□□ -0.47
HOXA1P49639 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC12.09□□□□□ -0.47
HOXA1P49639 ANXA8-205ENST00000585281 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
HOXA1P49639 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXA1P49639 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXA1P49639 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
HOXA1P49639 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
HOXA1P49639 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
HOXA1P49639 AC090114.2-201ENST00000608477 7054 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA1P49639 FHOD3-206ENST00000590592 4869 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 AL158070.2-201ENST00000623713 1621 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
HOXA1P49639 TSEN15P1-201ENST00000423257 515 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 AP006288.1-201ENST00000446065 395 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXA1P49639 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.08□□□□□ -0.48
HOXA1P49639 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.08□□□□□ -0.48
HOXA1P49639 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.08□□□□□ -0.48
HOXA1P49639 AC109322.1-201ENST00000524499 1264 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 AC004449.1-201ENST00000564240 433 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC12.08□□□□□ -0.48
HOXA1P49639 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.08□□□□□ -0.48
HOXA1P49639 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 FAM90A12P-201ENST00000519497 2375 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 FAM90A24P-201ENST00000520792 2369 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 AL805961.2-201ENST00000642139 4817 ntBASIC12.08□□□□□ -0.48
HOXA1P49639 TMC8-201ENST00000318430 4411 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
HOXA1P49639 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms