Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 MIR1247-201ENST00000408206 136 ntBASIC15.18■□□□□ 0.02
APOEP02649 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.18■□□□□ 0.02
APOEP02649 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
APOEP02649 KRT8P13-201ENST00000463294 1010 ntBASIC15.18■□□□□ 0.02
APOEP02649 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 AC020914.3-201ENST00000594712 304 ntBASIC15.18■□□□□ 0.02
APOEP02649 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.18■□□□□ 0.02
APOEP02649 AP000346.4-201ENST00000614827 381 ntBASIC15.18■□□□□ 0.02
APOEP02649 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
APOEP02649 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.18■□□□□ 0.02
APOEP02649 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.18■□□□□ 0.02
APOEP02649 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.18■□□□□ 0.02
APOEP02649 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
APOEP02649 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.17■□□□□ 0.02
APOEP02649 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.17■□□□□ 0.02
APOEP02649 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.17■□□□□ 0.02
APOEP02649 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.17■□□□□ 0.02
APOEP02649 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC15.17■□□□□ 0.02
APOEP02649 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
APOEP02649 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
APOEP02649 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.17■□□□□ 0.02
APOEP02649 AC044849.1-201ENST00000519737 1188 ntBASIC15.17■□□□□ 0.02
APOEP02649 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC15.17■□□□□ 0.02
APOEP02649 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.17■□□□□ 0.02
APOEP02649 AC013355.1-201ENST00000562625 723 ntBASIC15.17■□□□□ 0.02
APOEP02649 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.17■□□□□ 0.02
APOEP02649 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.17■□□□□ 0.02
APOEP02649 AC244452.3-201ENST00000636814 210 ntBASIC15.17■□□□□ 0.02
APOEP02649 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
APOEP02649 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
APOEP02649 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
APOEP02649 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 MBLAC2-202ENST00000514906 1936 ntBASIC15.17■□□□□ 0.02
APOEP02649 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.17■□□□□ 0.02
APOEP02649 FAS-202ENST00000352159 1722 ntTSL 5 BASIC15.17■□□□□ 0.02
APOEP02649 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 TMBIM7P-202ENST00000641474 1516 ntBASIC15.17■□□□□ 0.02
APOEP02649 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
APOEP02649 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC15.16■□□□□ 0.02
APOEP02649 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
APOEP02649 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.16■□□□□ 0.02
APOEP02649 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
APOEP02649 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.16■□□□□ 0.02
APOEP02649 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC15.16■□□□□ 0.02
APOEP02649 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
APOEP02649 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
APOEP02649 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms