Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.43□□□□□ -0.1
SHOX2O60902 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.43□□□□□ -0.1
SHOX2O60902 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC14.43□□□□□ -0.1
SHOX2O60902 AC022145.2-201ENST00000598203 171 ntBASIC14.43□□□□□ -0.1
SHOX2O60902 AC055717.3-201ENST00000622967 595 ntBASIC14.43□□□□□ -0.1
SHOX2O60902 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 AL035456.1-201ENST00000456064 1369 ntBASIC14.43□□□□□ -0.1
SHOX2O60902 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 VPS33B-202ENST00000535906 2420 ntTSL 2 BASIC14.43□□□□□ -0.1
SHOX2O60902 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC14.43□□□□□ -0.1
SHOX2O60902 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC14.43□□□□□ -0.1
SHOX2O60902 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SHOX2O60902 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 NR4A1-201ENST00000243050 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 PRKAB1-206ENST00000541640 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 CTAGE10P-201ENST00000318353 2408 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 PMP22-202ENST00000395936 816 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 AL139094.1-201ENST00000405549 1188 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.42□□□□□ -0.1
SHOX2O60902 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 KRT18P32-201ENST00000424695 1287 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 ACTG1P14-201ENST00000446382 1122 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC14.42□□□□□ -0.1
SHOX2O60902 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 AC027237.1-201ENST00000560942 655 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 AC007967.4-201ENST00000614700 386 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.42□□□□□ -0.1
SHOX2O60902 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.42□□□□□ -0.1
SHOX2O60902 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 AL162391.1-201ENST00000419853 2102 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
SHOX2O60902 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 ZNF493-208ENST00000599461 1769 ntBASIC14.42□□□□□ -0.1
SHOX2O60902 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 CXCL5-201ENST00000296027 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC14.42□□□□□ -0.1
SHOX2O60902 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 SLC45A2-202ENST00000382102 2723 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SHOX2O60902 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 POTEI-203ENST00000631234 2072 ntTSL 2 BASIC14.42□□□□□ -0.1
SHOX2O60902 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SHOX2O60902 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 MICA-210ENST00000616296 2260 ntTSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
SHOX2O60902 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 TYK2-205ENST00000525621 4347 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
SHOX2O60902 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SHOX2O60902 STAT3-202ENST00000389272 2615 ntTSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms