Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 RPL35P9-201ENST00000446059 350 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 RN7SL788P-201ENST00000460504 316 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 AL118516.1-201ENST00000564152 670 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 AC012073.1-201ENST00000606114 1108 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 AC091769.1-201ENST00000619576 568 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 AC148477.9-201ENST00000623974 539 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 LINC00244-201ENST00000625073 613 ntBASIC17.74■□□□□ 0.43
SYNE4Q8N205 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC17.74■□□□□ 0.43
SYNE4Q8N205 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
SYNE4Q8N205 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 AC021305.1-201ENST00000520656 1514 ntBASIC17.73■□□□□ 0.43
SYNE4Q8N205 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 RNVU1-8-201ENST00000364272 125 ntBASIC17.73■□□□□ 0.43
SYNE4Q8N205 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 PPP1R2P4-201ENST00000424051 595 ntBASIC17.73■□□□□ 0.43
SYNE4Q8N205 CHCHD2P2-201ENST00000503744 321 ntBASIC17.73■□□□□ 0.43
SYNE4Q8N205 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 IGHV1-12-201ENST00000518307 205 ntBASIC17.73■□□□□ 0.43
SYNE4Q8N205 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 AC007952.5-201ENST00000572818 1486 ntBASIC17.73■□□□□ 0.43
SYNE4Q8N205 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC17.73■□□□□ 0.43
SYNE4Q8N205 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SYNE4Q8N205 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 HSPA8P5-201ENST00000456928 2069 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 BX679664.3-201ENST00000414070 555 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC098934.1-203ENST00000442868 1262 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC113935.1-201ENST00000471722 555 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 FAM86KP-201ENST00000509817 987 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC012158.2-201ENST00000536546 354 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SYNE4Q8N205 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC17.72■□□□□ 0.43
SYNE4Q8N205 AC139749.1-202ENST00000617529 3139 ntBASIC17.72■□□□□ 0.43
SYNE4Q8N205 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms