Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA4P78363 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA4P78363 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
ABCA4P78363 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA4P78363 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA4P78363 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.44□□□□□ -0.42
ABCA4P78363 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
ABCA4P78363 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA4P78363 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 AC073869.2-201ENST00000417338 1026 ntBASIC12.43□□□□□ -0.42
ABCA4P78363 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA4P78363 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.43□□□□□ -0.42
ABCA4P78363 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.43□□□□□ -0.42
ABCA4P78363 AC093752.3-201ENST00000567343 901 ntBASIC12.43□□□□□ -0.42
ABCA4P78363 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA4P78363 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
ABCA4P78363 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.43□□□□□ -0.42
ABCA4P78363 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
ABCA4P78363 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 GSN-215ENST00000545652 2428 ntTSL 2 BASIC12.43□□□□□ -0.42
ABCA4P78363 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 AC009093.10-201ENST00000641956 1442 ntBASIC12.43□□□□□ -0.42
ABCA4P78363 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC12.43□□□□□ -0.42
ABCA4P78363 KRT8P28-201ENST00000433288 1390 ntBASIC12.43□□□□□ -0.42
ABCA4P78363 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
ABCA4P78363 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC12.42□□□□□ -0.42
ABCA4P78363 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC12.42□□□□□ -0.42
ABCA4P78363 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 RNA5SP417-201ENST00000516459 108 ntBASIC12.42□□□□□ -0.42
ABCA4P78363 EIF5AP2-201ENST00000585668 1047 ntBASIC12.42□□□□□ -0.42
ABCA4P78363 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
ABCA4P78363 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA4P78363 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
ABCA4P78363 AL136172.1-201ENST00000598590 1394 ntBASIC12.42□□□□□ -0.42
ABCA4P78363 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.42□□□□□ -0.42
ABCA4P78363 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.42□□□□□ -0.42
ABCA4P78363 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA4P78363 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.42□□□□□ -0.42
ABCA4P78363 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC12.42□□□□□ -0.42
ABCA4P78363 NAMA-206ENST00000605377 509 ntTSL 5 BASIC12.42□□□□□ -0.42
ABCA4P78363 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.42□□□□□ -0.42
ABCA4P78363 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
ABCA4P78363 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
ABCA4P78363 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms