Protein–RNA interactions for Protein: P48065

SLC6A12, Sodium- and chloride-dependent betaine transporter, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A12P48065 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC6A12P48065 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SLC6A12P48065 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.19
SLC6A12P48065 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
SLC6A12P48065 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.19
SLC6A12P48065 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC13.89□□□□□ -0.19
SLC6A12P48065 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.89□□□□□ -0.19
SLC6A12P48065 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SLC6A12P48065 AC103592.1-201ENST00000394513 664 ntBASIC13.89□□□□□ -0.19
SLC6A12P48065 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.89□□□□□ -0.19
SLC6A12P48065 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC6A12P48065 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.89□□□□□ -0.19
SLC6A12P48065 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC6A12P48065 SNORD3B-2-202ENST00000571722 791 ntBASIC13.89□□□□□ -0.19
SLC6A12P48065 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.89□□□□□ -0.19
SLC6A12P48065 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC6A12P48065 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC6A12P48065 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 LINC02486-201ENST00000604157 3000 ntBASIC13.89□□□□□ -0.19
SLC6A12P48065 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC6A12P48065 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
SLC6A12P48065 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC6A12P48065 AC097376.2-205ENST00000610159 5334 ntBASIC13.88□□□□□ -0.19
SLC6A12P48065 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.88□□□□□ -0.19
SLC6A12P48065 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
SLC6A12P48065 DPM3-202ENST00000368399 517 ntBASIC13.88□□□□□ -0.19
SLC6A12P48065 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 AK2P2-201ENST00000439142 405 ntBASIC13.88□□□□□ -0.19
SLC6A12P48065 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.88□□□□□ -0.19
SLC6A12P48065 FAM8A2P-201ENST00000528813 1142 ntBASIC13.88□□□□□ -0.19
SLC6A12P48065 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 RN7SL163P-201ENST00000583100 276 ntBASIC13.88□□□□□ -0.19
SLC6A12P48065 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.88□□□□□ -0.19
SLC6A12P48065 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 AC090164.2-201ENST00000611487 516 ntBASIC13.88□□□□□ -0.19
SLC6A12P48065 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC6A12P48065 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
SLC6A12P48065 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC6A12P48065 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC6A12P48065 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms