Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FAM90A25P-201ENST00000528404 1395 ntBASIC16.17■□□□□ 0.18
CIITAP33076 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CIITAP33076 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC16.17■□□□□ 0.18
CIITAP33076 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.17■□□□□ 0.18
CIITAP33076 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.17■□□□□ 0.18
CIITAP33076 UPF3AP2-201ENST00000457924 1132 ntBASIC16.17■□□□□ 0.18
CIITAP33076 AC008723.1-201ENST00000506922 207 ntBASIC16.17■□□□□ 0.18
CIITAP33076 AC114947.1-202ENST00000514136 344 ntBASIC16.17■□□□□ 0.18
CIITAP33076 FGFR3P5-201ENST00000564496 886 ntBASIC16.17■□□□□ 0.18
CIITAP33076 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.17■□□□□ 0.18
CIITAP33076 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CIITAP33076 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CIITAP33076 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CIITAP33076 AC090643.2-201ENST00000623442 2029 ntBASIC16.16■□□□□ 0.18
CIITAP33076 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 AMT-256ENST00000638063 1783 ntTSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CIITAP33076 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
CIITAP33076 BAX-205ENST00000391871 687 ntTSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC16.16■□□□□ 0.18
CIITAP33076 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.16■□□□□ 0.18
CIITAP33076 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.16■□□□□ 0.18
CIITAP33076 MIR3677-201ENST00000578964 60 ntBASIC16.16■□□□□ 0.18
CIITAP33076 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.16■□□□□ 0.18
CIITAP33076 AC012044.1-201ENST00000603431 297 ntBASIC16.16■□□□□ 0.18
CIITAP33076 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CIITAP33076 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CIITAP33076 AL161772.1-201ENST00000610494 4412 ntBASIC16.16■□□□□ 0.18
CIITAP33076 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC16.16■□□□□ 0.18
CIITAP33076 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.16■□□□□ 0.18
CIITAP33076 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CIITAP33076 KRT8P19-201ENST00000551916 1455 ntBASIC16.16■□□□□ 0.18
CIITAP33076 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC16.16■□□□□ 0.18
CIITAP33076 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CIITAP33076 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CIITAP33076 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 MIR557-201ENST00000385239 98 ntBASIC16.15■□□□□ 0.18
CIITAP33076 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 DUTP3-201ENST00000450025 415 ntBASIC16.15■□□□□ 0.18
CIITAP33076 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CIITAP33076 CEP164P1-201ENST00000455142 418 ntBASIC16.15■□□□□ 0.18
CIITAP33076 RN7SL67P-201ENST00000492147 296 ntBASIC16.15■□□□□ 0.18
CIITAP33076 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.15■□□□□ 0.18
CIITAP33076 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CIITAP33076 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC16.15■□□□□ 0.18
CIITAP33076 AC009560.1-201ENST00000620208 434 ntBASIC16.15■□□□□ 0.18
CIITAP33076 TBC1D3J-201ENST00000620719 1426 ntBASIC16.15■□□□□ 0.18
CIITAP33076 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms