Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC022447.5-201ENST00000504817 392 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 AC140658.4-201ENST00000561990 352 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 SKA2-205ENST00000580541 689 ntTSL 3 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RN7SL480P-201ENST00000581481 294 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 AP001462.1-201ENST00000594089 452 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 CLPP-205ENST00000596605 646 ntTSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 AL021707.6-201ENST00000609212 491 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.97■□□□□ 0.31
SMC1BQ8NDV3 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 LINC00265-2P-201ENST00000413372 782 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AP000533.1-201ENST00000456143 1177 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 RN7SL788P-201ENST00000460504 316 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 RN7SL363P-201ENST00000482412 273 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 ALG1L7P-201ENST00000502317 768 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 PRSS3P1-201ENST00000503996 742 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC100858.1-201ENST00000514059 1228 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 BAK1P2-201ENST00000532665 631 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 MST1L-204ENST00000545160 559 ntTSL 4 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC005746.3-201ENST00000614751 393 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AC091769.1-201ENST00000619576 568 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 MTHFR-217ENST00000641820 1569 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 AL590440.2-201ENST00000641973 1595 ntBASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.96■□□□□ 0.31
SMC1BQ8NDV3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 SHMT1P1-201ENST00000419974 1312 ntBASIC16.96■□□□□ 0.3
SMC1BQ8NDV3 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SMC1BQ8NDV3 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms