Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
IRX4P78413 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.19■□□□□ 0.02
IRX4P78413 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.19■□□□□ 0.02
IRX4P78413 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.19■□□□□ 0.02
IRX4P78413 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 AC114812.1-204ENST00000449669 728 ntBASIC15.19■□□□□ 0.02
IRX4P78413 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 RN7SL720P-201ENST00000488178 304 ntBASIC15.19■□□□□ 0.02
IRX4P78413 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.19■□□□□ 0.02
IRX4P78413 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 AC044849.1-201ENST00000519737 1188 ntBASIC15.19■□□□□ 0.02
IRX4P78413 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.19■□□□□ 0.02
IRX4P78413 RN7SL48P-201ENST00000579283 293 ntBASIC15.19■□□□□ 0.02
IRX4P78413 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
IRX4P78413 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 AC138649.2-201ENST00000615886 705 ntBASIC15.19■□□□□ 0.02
IRX4P78413 AP001505.2-201ENST00000616815 443 ntBASIC15.19■□□□□ 0.02
IRX4P78413 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC15.19■□□□□ 0.02
IRX4P78413 HSPA7-201ENST00000445535 1927 ntBASIC15.19■□□□□ 0.02
IRX4P78413 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC15.19■□□□□ 0.02
IRX4P78413 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.19■□□□□ 0.02
IRX4P78413 AC007787.1-201ENST00000588095 1583 ntBASIC15.19■□□□□ 0.02
IRX4P78413 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
IRX4P78413 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
IRX4P78413 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
IRX4P78413 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 RNU1-114P-201ENST00000365297 166 ntBASIC15.18■□□□□ 0.02
IRX4P78413 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
IRX4P78413 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.18■□□□□ 0.02
IRX4P78413 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.18■□□□□ 0.02
IRX4P78413 SPTLC1P5-201ENST00000450718 252 ntBASIC15.18■□□□□ 0.02
IRX4P78413 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.18■□□□□ 0.02
IRX4P78413 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.18■□□□□ 0.02
IRX4P78413 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.18■□□□□ 0.02
IRX4P78413 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.18■□□□□ 0.02
IRX4P78413 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 AC244157.2-201ENST00000616239 1006 ntBASIC15.18■□□□□ 0.02
IRX4P78413 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
IRX4P78413 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
IRX4P78413 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
IRX4P78413 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 AL359881.3-201ENST00000602640 1721 ntBASIC15.17■□□□□ 0.02
IRX4P78413 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
IRX4P78413 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
IRX4P78413 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
IRX4P78413 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms