Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC12.99□□□□□ -0.33
CLRN1P58418 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC12.99□□□□□ -0.33
CLRN1P58418 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC12.99□□□□□ -0.33
CLRN1P58418 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC12.99□□□□□ -0.33
CLRN1P58418 WNT11-204ENST00000621122 789 ntTSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.99□□□□□ -0.33
CLRN1P58418 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
CLRN1P58418 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CLRN1P58418 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
CLRN1P58418 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 RBM38-204ENST00000371219 760 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC12.98□□□□□ -0.33
CLRN1P58418 AK6-201ENST00000380818 1183 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
CLRN1P58418 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 U91328.1-201ENST00000437528 223 ntBASIC12.98□□□□□ -0.33
CLRN1P58418 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 YBX1P6-201ENST00000442962 1002 ntBASIC12.98□□□□□ -0.33
CLRN1P58418 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC12.98□□□□□ -0.33
CLRN1P58418 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.98□□□□□ -0.33
CLRN1P58418 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.98□□□□□ -0.33
CLRN1P58418 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
CLRN1P58418 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
CLRN1P58418 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 E2F3P2-201ENST00000447755 1422 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CLRN1P58418 AC064801.2-201ENST00000625052 1303 ntBASIC12.97□□□□□ -0.33
CLRN1P58418 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CLRN1P58418 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
CLRN1P58418 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms