Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA1P55317 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.02□□□□□ -0.16
FOXA1P55317 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
FOXA1P55317 USP17L6P-201ENST00000382470 1197 ntBASIC14.02□□□□□ -0.17
FOXA1P55317 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXA1P55317 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA1P55317 AL035414.1-201ENST00000451327 857 ntBASIC14.02□□□□□ -0.17
FOXA1P55317 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.02□□□□□ -0.17
FOXA1P55317 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA1P55317 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXA1P55317 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.02□□□□□ -0.17
FOXA1P55317 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXA1P55317 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.02□□□□□ -0.17
FOXA1P55317 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.02□□□□□ -0.17
FOXA1P55317 AL022328.1-201ENST00000610050 478 ntBASIC14.02□□□□□ -0.17
FOXA1P55317 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA1P55317 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXA1P55317 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
FOXA1P55317 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
FOXA1P55317 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXA1P55317 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
FOXA1P55317 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
FOXA1P55317 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.01□□□□□ -0.17
FOXA1P55317 MIR326-201ENST00000362220 95 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.01□□□□□ -0.17
FOXA1P55317 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.01□□□□□ -0.17
FOXA1P55317 CHMP1AP1-201ENST00000445563 662 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 AC007551.1-201ENST00000457394 519 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 BTNL10-201ENST00000595971 695 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 AC008825.2-201ENST00000603374 718 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 SHC1P1-201ENST00000425230 1745 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXA1P55317 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 AC019294.4-201ENST00000561777 2905 ntBASIC14.01□□□□□ -0.17
FOXA1P55317 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXA1P55317 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXA1P55317 AC073869.1-201ENST00000415574 2762 ntBASIC14□□□□□ -0.17
FOXA1P55317 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
FOXA1P55317 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14□□□□□ -0.17
FOXA1P55317 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXA1P55317 E2F3P2-201ENST00000447755 1422 ntBASIC14□□□□□ -0.17
FOXA1P55317 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms