Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NUP98P52948 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC17.49■□□□□ 0.39
NUP98P52948 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NUP98P52948 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
NUP98P52948 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
NUP98P52948 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NUP98P52948 DKKL1P1-201ENST00000400550 698 ntBASIC17.49■□□□□ 0.39
NUP98P52948 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC17.49■□□□□ 0.39
NUP98P52948 IGHEP2-201ENST00000519308 1256 ntBASIC17.49■□□□□ 0.39
NUP98P52948 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.49■□□□□ 0.39
NUP98P52948 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.49■□□□□ 0.39
NUP98P52948 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
NUP98P52948 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.49■□□□□ 0.39
NUP98P52948 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
NUP98P52948 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
NUP98P52948 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
NUP98P52948 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.48■□□□□ 0.39
NUP98P52948 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
NUP98P52948 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 OR10N1P-201ENST00000392758 869 ntBASIC17.48■□□□□ 0.39
NUP98P52948 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC17.48■□□□□ 0.39
NUP98P52948 VDAC1P11-201ENST00000458323 852 ntBASIC17.48■□□□□ 0.39
NUP98P52948 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC17.48■□□□□ 0.39
NUP98P52948 RNF146-211ENST00000609447 607 ntTSL 4 BASIC17.48■□□□□ 0.39
NUP98P52948 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
NUP98P52948 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
NUP98P52948 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.48■□□□□ 0.39
NUP98P52948 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
NUP98P52948 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NUP98P52948 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC17.47■□□□□ 0.39
NUP98P52948 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
NUP98P52948 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
NUP98P52948 AL080243.1-201ENST00000423293 1060 ntBASIC17.47■□□□□ 0.39
NUP98P52948 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC17.47■□□□□ 0.39
NUP98P52948 MIR4326-201ENST00000582203 59 ntBASIC17.47■□□□□ 0.39
NUP98P52948 GARS-210ENST00000627489 324 ntTSL 4 BASIC17.47■□□□□ 0.39
NUP98P52948 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
NUP98P52948 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NUP98P52948 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
NUP98P52948 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.47■□□□□ 0.39
NUP98P52948 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
NUP98P52948 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC17.47■□□□□ 0.39
NUP98P52948 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 NRADDP-201ENST00000437305 691 ntBASIC17.47■□□□□ 0.39
NUP98P52948 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 RN7SL288P-201ENST00000490496 291 ntBASIC17.47■□□□□ 0.39
NUP98P52948 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC17.47■□□□□ 0.39
NUP98P52948 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC17.47■□□□□ 0.39
NUP98P52948 FAM187B2P-201ENST00000577135 713 ntBASIC17.47■□□□□ 0.39
NUP98P52948 AP005212.2-201ENST00000584979 510 ntBASIC17.47■□□□□ 0.39
NUP98P52948 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC17.47■□□□□ 0.39
NUP98P52948 AC006548.2-201ENST00000605217 529 ntBASIC17.47■□□□□ 0.39
NUP98P52948 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC17.47■□□□□ 0.39
NUP98P52948 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NUP98P52948 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.46■□□□□ 0.39
NUP98P52948 HSPA7-201ENST00000445535 1927 ntBASIC17.46■□□□□ 0.39
NUP98P52948 AC089987.1-201ENST00000551654 2209 ntBASIC17.46■□□□□ 0.39
NUP98P52948 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.46■□□□□ 0.39
NUP98P52948 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NUP98P52948 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.46■□□□□ 0.39
NUP98P52948 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
NUP98P52948 TKT-201ENST00000296289 1931 ntTSL 5 BASIC17.46■□□□□ 0.39
NUP98P52948 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
NUP98P52948 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms