Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RFC3P40938 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFC3P40938 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFC3P40938 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.33□□□□□ -0.28
RFC3P40938 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFC3P40938 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.33□□□□□ -0.28
RFC3P40938 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFC3P40938 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RFC3P40938 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.28
RFC3P40938 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 AC117489.1-201ENST00000625169 3217 ntBASIC13.32□□□□□ -0.28
RFC3P40938 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 AC015688.4-201ENST00000580780 1647 ntBASIC13.32□□□□□ -0.28
RFC3P40938 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RFC3P40938 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 AC018442.1-201ENST00000421439 2061 ntBASIC13.32□□□□□ -0.28
RFC3P40938 AC232323.1-201ENST00000540724 2099 ntBASIC13.32□□□□□ -0.28
RFC3P40938 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.32□□□□□ -0.28
RFC3P40938 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 AL596276.2-201ENST00000447525 331 ntBASIC13.32□□□□□ -0.28
RFC3P40938 AC073150.1-201ENST00000450406 1084 ntBASIC13.32□□□□□ -0.28
RFC3P40938 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.32□□□□□ -0.28
RFC3P40938 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.32□□□□□ -0.28
RFC3P40938 AC020922.3-201ENST00000595064 547 ntBASIC13.32□□□□□ -0.28
RFC3P40938 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.32□□□□□ -0.28
RFC3P40938 AC092299.1-201ENST00000632679 757 ntBASIC13.32□□□□□ -0.28
RFC3P40938 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RFC3P40938 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RFC3P40938 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
RFC3P40938 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 KRT8P19-201ENST00000551916 1455 ntBASIC13.31□□□□□ -0.28
RFC3P40938 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
RFC3P40938 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.31□□□□□ -0.28
RFC3P40938 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RFC3P40938 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
RFC3P40938 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms