Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 BX640514.1-201ENST00000583223 1918 ntBASIC13.31□□□□□ -0.28
MSX1P28360 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 SDCCAG3P2-201ENST00000326105 1023 ntBASIC13.31□□□□□ -0.28
MSX1P28360 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
MSX1P28360 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 SEC63P1-201ENST00000425785 1258 ntBASIC13.31□□□□□ -0.28
MSX1P28360 AL645933.1-201ENST00000440087 609 ntBASIC13.31□□□□□ -0.28
MSX1P28360 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
MSX1P28360 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.31□□□□□ -0.28
MSX1P28360 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 MIR4783-201ENST00000580343 82 ntBASIC13.31□□□□□ -0.28
MSX1P28360 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.31□□□□□ -0.28
MSX1P28360 AC005324.6-201ENST00000587972 613 ntBASIC13.31□□□□□ -0.28
MSX1P28360 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC13.31□□□□□ -0.28
MSX1P28360 AC097724.1-201ENST00000609581 426 ntBASIC13.31□□□□□ -0.28
MSX1P28360 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 Z98259.2-201ENST00000641583 609 ntBASIC13.31□□□□□ -0.28
MSX1P28360 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 AP001267.2-201ENST00000532619 2086 ntBASIC13.31□□□□□ -0.28
MSX1P28360 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 AC092053.3-201ENST00000641308 4975 ntBASIC13.31□□□□□ -0.28
MSX1P28360 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.31□□□□□ -0.28
MSX1P28360 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.31□□□□□ -0.28
MSX1P28360 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MSX1P28360 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 AC005912.2-201ENST00000619492 2400 ntBASIC13.3□□□□□ -0.28
MSX1P28360 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
MSX1P28360 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC13.3□□□□□ -0.28
MSX1P28360 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 MAGEA5-201ENST00000446757 942 ntBASIC13.3□□□□□ -0.28
MSX1P28360 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.3□□□□□ -0.28
MSX1P28360 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 SPTLC1P5-201ENST00000450718 252 ntBASIC13.3□□□□□ -0.28
MSX1P28360 MPRIPP1-201ENST00000452433 1089 ntBASIC13.3□□□□□ -0.28
MSX1P28360 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.3□□□□□ -0.28
MSX1P28360 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 TMEM198B-204ENST00000484016 896 ntBASIC13.3□□□□□ -0.28
MSX1P28360 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.3□□□□□ -0.28
MSX1P28360 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC13.3□□□□□ -0.28
MSX1P28360 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.3□□□□□ -0.28
MSX1P28360 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MSX1P28360 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 AC005730.2-201ENST00000564549 1184 ntBASIC13.3□□□□□ -0.28
MSX1P28360 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.3□□□□□ -0.28
MSX1P28360 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC13.3□□□□□ -0.28
MSX1P28360 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.3□□□□□ -0.28
MSX1P28360 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
MSX1P28360 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
MSX1P28360 Metazoa_SRP.91-201ENST00000622745 281 ntBASIC13.3□□□□□ -0.28
MSX1P28360 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms