Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 AC018846.1-201ENST00000568231 183 ntBASIC12.64□□□□□ -0.39
COL8A1P27658 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC12.64□□□□□ -0.39
COL8A1P27658 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC12.64□□□□□ -0.39
COL8A1P27658 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC12.64□□□□□ -0.39
COL8A1P27658 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 AC007292.2-201ENST00000593524 1812 ntBASIC12.64□□□□□ -0.39
COL8A1P27658 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
COL8A1P27658 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
COL8A1P27658 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.64□□□□□ -0.39
COL8A1P27658 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
COL8A1P27658 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
COL8A1P27658 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.63□□□□□ -0.39
COL8A1P27658 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 AC006372.4-201ENST00000624122 1543 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
COL8A1P27658 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC12.63□□□□□ -0.39
COL8A1P27658 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.63□□□□□ -0.39
COL8A1P27658 AC069224.1-201ENST00000566372 1715 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 AC106827.1-201ENST00000366454 431 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC12.63□□□□□ -0.39
COL8A1P27658 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC12.63□□□□□ -0.39
COL8A1P27658 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC12.63□□□□□ -0.39
COL8A1P27658 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 GNG10P1-201ENST00000452289 199 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC12.63□□□□□ -0.39
COL8A1P27658 CASP3-205ENST00000517513 964 ntTSL 5 BASIC12.63□□□□□ -0.39
COL8A1P27658 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC12.63□□□□□ -0.39
COL8A1P27658 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
COL8A1P27658 AC009948.4-201ENST00000604692 675 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 MIR6125-201ENST00000618986 96 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC12.63□□□□□ -0.39
COL8A1P27658 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 AC003102.2-201ENST00000589195 1469 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.63□□□□□ -0.39
COL8A1P27658 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 AC009090.5-201ENST00000624886 2285 ntBASIC12.63□□□□□ -0.39
COL8A1P27658 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms