Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL132642.2-201ENST00000623423 1998 ntBASIC14.47□□□□□ -0.09
SHOX2O60902 VSTM2A-201ENST00000302287 3401 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 NRP2-202ENST00000357118 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
SHOX2O60902 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
SHOX2O60902 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 MCCD1P2-201ENST00000423228 335 ntBASIC14.47□□□□□ -0.09
SHOX2O60902 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.47□□□□□ -0.09
SHOX2O60902 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.47□□□□□ -0.09
SHOX2O60902 AC040169.1-201ENST00000565382 521 ntBASIC14.47□□□□□ -0.09
SHOX2O60902 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.47□□□□□ -0.09
SHOX2O60902 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.47□□□□□ -0.09
SHOX2O60902 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 LINC02084-201ENST00000606069 1096 ntBASIC14.47□□□□□ -0.09
SHOX2O60902 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
SHOX2O60902 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
SHOX2O60902 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC14.47□□□□□ -0.09
SHOX2O60902 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 FRMD1-205ENST00000440994 2857 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
SHOX2O60902 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 A1CF-204ENST00000373997 2116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
SHOX2O60902 CCDC3-202ENST00000378839 3180 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SHOX2O60902 SLC44A4-202ENST00000229729 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC14.46□□□□□ -0.09
SHOX2O60902 AL138725.1-201ENST00000407347 1314 ntBASIC14.46□□□□□ -0.09
SHOX2O60902 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
SHOX2O60902 NEK3-205ENST00000610828 2396 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
SHOX2O60902 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.46□□□□□ -0.09
SHOX2O60902 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 HTR5BP-201ENST00000430851 1154 ntBASIC14.46□□□□□ -0.09
SHOX2O60902 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.46□□□□□ -0.09
SHOX2O60902 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
SHOX2O60902 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.46□□□□□ -0.09
SHOX2O60902 AC018529.1-201ENST00000613063 361 ntBASIC14.46□□□□□ -0.09
SHOX2O60902 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.46□□□□□ -0.09
SHOX2O60902 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 C20orf181-201ENST00000623918 480 ntBASIC14.46□□□□□ -0.09
SHOX2O60902 STK40-201ENST00000359297 4837 ntTSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 USB1-207ENST00000563149 1751 ntTSL 2 BASIC14.46□□□□□ -0.09
SHOX2O60902 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
SHOX2O60902 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
SHOX2O60902 GBP1P1-201ENST00000394662 1740 ntBASIC14.46□□□□□ -0.1
SHOX2O60902 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC14.46□□□□□ -0.1
SHOX2O60902 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
SHOX2O60902 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
SHOX2O60902 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SHOX2O60902 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
SHOX2O60902 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.1
SHOX2O60902 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.46□□□□□ -0.1
SHOX2O60902 PPP1R11-204ENST00000376769 1689 ntTSL 2 BASIC14.46□□□□□ -0.1
SHOX2O60902 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
SHOX2O60902 GGTA1P-202ENST00000481534 3429 ntTSL 2 BASIC14.46□□□□□ -0.1
SHOX2O60902 AL357060.2-202ENST00000606998 1959 ntTSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 FLJ30679-201ENST00000624773 1980 ntBASIC14.45□□□□□ -0.1
SHOX2O60902 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 DPYSL2-206ENST00000523027 2130 ntTSL 2 BASIC14.45□□□□□ -0.1
SHOX2O60902 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms