Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC27.1■■□□□ 1.93
SHROOM4Q9ULL8 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 SORD2P-201ENST00000558556 1069 ntBASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC27.09■■□□□ 1.93
SHROOM4Q9ULL8 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 MBP-238ENST00000580402 915 ntTSL 5 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
SHROOM4Q9ULL8 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 TEKT4P2-202ENST00000559466 1312 ntBASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AL161932.2-201ENST00000435436 679 ntBASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC013553.1-201ENST00000560906 267 ntBASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 AGGF1P1-201ENST00000509500 2073 ntBASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC27.07■■□□□ 1.92
SHROOM4Q9ULL8 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC006529.1-201ENST00000459978 637 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 ALG1L3P-201ENST00000503331 765 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 COX5A-205ENST00000568517 582 ntTSL 3 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 TRMT112P3-201ENST00000580149 358 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC004686.1-201ENST00000605113 538 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC090386.2-201ENST00000623010 1039 ntBASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
SHROOM4Q9ULL8 AC067931.2-201ENST00000623655 2003 ntBASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms