Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 MSTO2P-201ENST00000314835 1709 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 CICP16-201ENST00000502609 2813 ntBASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC39Q9UFE4 TSN-212ENST00000536142 3328 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AC111170.3-201ENST00000624282 2464 ntBASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AC025048.6-201ENST00000634326 1161 ntBASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AC131212.3-201ENST00000624087 4219 ntBASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC39Q9UFE4 AL118506.1-201ENST00000601296 3082 ntBASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 JUN-201ENST00000371222 3540 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 AC004466.1-201ENST00000599515 1080 ntBASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 PEG13-201ENST00000631594 5667 ntBASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 AC003102.2-201ENST00000589195 1469 ntBASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC39Q9UFE4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms