Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC104073.2-201ENST00000453737 312 ntBASIC13.82□□□□□ -0.2
CCDC88CQ9P219 RN7SL769P-201ENST00000469386 295 ntBASIC13.82□□□□□ -0.2
CCDC88CQ9P219 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC106872.11-201ENST00000605838 421 ntBASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC027601.3-201ENST00000622907 509 ntBASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC067930.6-201ENST00000623257 4947 ntBASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC015802.1-201ENST00000588104 1449 ntBASIC13.82□□□□□ -0.2
CCDC88CQ9P219 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CCDC88CQ9P219 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AC021723.1-201ENST00000486306 515 ntBASIC13.81□□□□□ -0.2
CCDC88CQ9P219 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 RNA5SP423-201ENST00000517127 109 ntBASIC13.81□□□□□ -0.2
CCDC88CQ9P219 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AC020910.6-201ENST00000623084 1459 ntBASIC13.81□□□□□ -0.2
CCDC88CQ9P219 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.81□□□□□ -0.2
CCDC88CQ9P219 RN7SL832P-201ENST00000607781 1756 ntBASIC13.81□□□□□ -0.2
CCDC88CQ9P219 RPL35-206ENST00000629845 340 ntTSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms