Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 KRT8P42-201ENST00000405771 1399 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC093462.1-201ENST00000621167 1683 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC041040.1-201ENST00000425197 460 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 MIR5091-201ENST00000578707 93 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AC016582.2-202ENST00000587765 1094 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC18.01■□□□□ 0.47
SHANK3Q9BYB0 STK16-202ENST00000409260 1493 ntTSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC015802.1-201ENST00000588104 1449 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 HYMAI-201ENST00000635591 3347 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 RN7SL578P-201ENST00000477781 283 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 PRR20FP-201ENST00000603320 180 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 NEK4P3-201ENST00000604859 544 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC254633.1-201ENST00000606790 345 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 AL450487.2-201ENST00000615934 407 ntBASIC18■□□□□ 0.47
SHANK3Q9BYB0 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SHANK3Q9BYB0 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SHANK3Q9BYB0 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 LILRP2-202ENST00000413572 1383 ntBASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 FAU-201ENST00000279259 461 ntTSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AC010086.2-201ENST00000428616 226 ntBASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AP003040.1-201ENST00000532044 1024 ntBASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 METTL7AP1-201ENST00000547343 496 ntBASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHANK3Q9BYB0 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms