Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLIP3Q96DZ5 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 AC023090.2-201ENST00000625182 2110 ntBASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 RN7SKP230-201ENST00000365642 335 ntBASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 NKAIN1P1-201ENST00000435754 582 ntBASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 BX284668.4-201ENST00000453917 508 ntBASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TUBB8P8-201ENST00000458717 1058 ntBASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CLIP3Q96DZ5 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 PI4KAP2-211ENST00000486209 3213 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 HIST2H2BC-201ENST00000498492 580 ntBASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 ADM-202ENST00000524948 584 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 DUX4L46-201ENST00000566845 751 ntBASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 ZBED1P1-201ENST00000502364 1930 ntBASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 AC003102.2-201ENST00000589195 1469 ntBASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms