Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC244669.2-201ENST00000612320 853 ntBASIC15.05■□□□□ -0
ATG4AQ8WYN0 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 TCAF1P1-201ENST00000414990 2232 ntBASIC15.05■□□□□ -0
ATG4AQ8WYN0 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC15.05■□□□□ -0
ATG4AQ8WYN0 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
ATG4AQ8WYN0 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 AC005229.1-201ENST00000392885 409 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 CD8B2-202ENST00000417670 633 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 TMEM14DP-201ENST00000422205 345 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 USP32P1-208ENST00000506594 1164 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 AL358472.3-201ENST00000608147 415 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 AC005562.1-201ENST00000583030 3219 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 AC020658.7-201ENST00000624274 2442 ntBASIC15.04■□□□□ -0
ATG4AQ8WYN0 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC15.04■□□□□ -0
ATG4AQ8WYN0 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC15.04■□□□□ -0
ATG4AQ8WYN0 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
ATG4AQ8WYN0 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 PTPA-215ENST00000432124 567 ntTSL 4 BASIC15.03■□□□□ -0
ATG4AQ8WYN0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms