Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
SHROOM3Q8TF72 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.71□□□□□ -0.06
SHROOM3Q8TF72 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 RCC2P8-201ENST00000502779 1035 ntBASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MIR3907-201ENST00000579424 151 ntBASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 AC009884.2-201ENST00000603110 324 ntBASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 AP003419.4-201ENST00000616071 517 ntBASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 AC091544.8-201ENST00000619490 361 ntBASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.7□□□□□ -0.06
SHROOM3Q8TF72 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC091046.1-201ENST00000331871 207 ntBASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 RN7SKP214-201ENST00000364208 315 ntBASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 MAGEA5-201ENST00000446757 942 ntBASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC100827.2-201ENST00000563214 1194 ntBASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AP002353.1-201ENST00000528257 1599 ntBASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHROOM3Q8TF72 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms