Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.98□□□□□ -0.17
CLHC1Q8NHS4 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 MPV17-205ENST00000402310 906 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TMEM14DP-201ENST00000422205 345 ntBASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 FAM197Y7-201ENST00000432892 766 ntBASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC002472.3-201ENST00000640124 621 ntBASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.97□□□□□ -0.17
CLHC1Q8NHS4 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 AL365181.3-201ENST00000605886 3222 ntBASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 APP-205ENST00000358918 2366 ntTSL 5 BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CLHC1Q8NHS4 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms